Bug#903759: pdb2pqr: autopkgtest regression

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Bug#903759: pdb2pqr: autopkgtest regression

Graham Inggs-3
Source: pdb2pqr
Version: 2.1.1+dfsg-2
User: [hidden email]
Usertags: needs-update

Hi Maintainer

Since 2017-06-15, pdb2pqr's auopkgtests have been failing [1].
Unfortunately, debci logs no longer exist, so it is not easy to tell
which package(s) changed.

More recent logs seem to indicate two failures:

autopkgtest [00:08:50]: test installation-test: [-----------------------
Run pdb2pqr...
Usage: pdb2pqr [options] PDB_PATH PQR_OUTPUT_PATH

pdb2pqr: error: Unable to find file 1FAS!
...
installation-test    FAIL non-zero exit status 2


autopkgtest [00:08:54]: test ligands-test: [-----------------------
cp: cannot stat '/usr/share/doc/pdb2pqr-doc/examples/*': No such file
or directory
autopkgtest [00:08:54]: test ligands-test: -----------------------]
autopkgtest [00:08:54]: test ligands-test:  - - - - - - - - - -
results - - - - - - - - - -
ligands-test         FAIL non-zero exit status 1

Regards
Graham


[1] https://ci.debian.net/packages/p/pdb2pqr/unstable/amd64/

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Bug#903759: pdb2pqr: autopkgtest regression

Graham Inggs-3
Control: reopen -1

Hi Andreas

The upload of pdb2pqr/2.1.1+dfsg-4 did fix the problem with
'/usr/share/doc/pdb2pqr-doc/examples/*'': No such file or directory

However, the other problem remains:

autopkgtest [21:10:58]: test installation-test: [-----------------------
Run pdb2pqr...
Usage: pdb2pqr [options] PDB_PATH PQR_OUTPUT_PATH

pdb2pqr: error: Unable to find file 1FAS!

autopkgtest [21:11:02]: test ligands-test: [-----------------------
Run pdb2pqr...
******** 1ABF starting
Usage: pdb2pqr [options] PDB_PATH PQR_OUTPUT_PATH

pdb2pqr: error: Unable to find file 1ABF!

Regards
Graham

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Bug#903759: 903759: marking as pending

Andrius Merkys
In reply to this post by Graham Inggs-3
control: tags -1 + pending

Hello,

the bug is fixed in salsa, marking the bug as pending.

Andrius

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Bug#903759: [Debian-med-packaging] Bug#903759: 903759: marking as pending

Graham Inggs-3
Hi Andrius

On Sat, 9 Mar 2019 at 14:45, Andrius Merkys <[hidden email]> wrote:
> the bug is fixed in salsa, marking the bug as pending.

Is there a reason not to upload?

Do you need a sponsor?

Regards
Graham

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Bug#903759: [Debian-med-packaging] Bug#903759: 903759: marking as pending

Andrius Merkys
Hi Graham,

I will upload soon. Became DD only recently, did not revisit my fixes to upload the packages.

Thanks for noticing,
Andrius

On Fri, 24 May 2019, 23:18 Graham Inggs, <[hidden email]> wrote:
Hi Andrius

On Sat, 9 Mar 2019 at 14:45, Andrius Merkys <[hidden email]> wrote:
> the bug is fixed in salsa, marking the bug as pending.

Is there a reason not to upload?

Do you need a sponsor?

Regards
Graham
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Bug#903759: [Debian-med-packaging] Bug#903759: Bug#903759: 903759: marking as pending

Graham Inggs-3
Hi Andrius

On 2019/05/24 22:41, Andrius Merkys wrote:
> I will upload soon. Became DD only recently, did not revisit my fixes to
> upload the packages.

Thanks for the upload, and congratulations!

I filed an unblock request (#929924).

Regards
Graham

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Bug#903759: [Debian-med-packaging] Bug#903759: Bug#903759: 903759: marking as pending

Andrius Merkys
Hi Graham,

On 2019-06-03 14:04, Graham Inggs wrote:
> Thanks for the upload, and congratulations!

Thanks a lot! :)

> I filed an unblock request (#929924).

Great - I forgot to do so.

Best,
Andrius

--
Andrius Merkys
Vilnius University Institute of Biotechnology, SaulÄ—tekio al. 7, room V325
LT-10257 Vilnius, Lithuania