Bug#919370: deal.ii: FTBFS on s390x: p4est.debug test fails

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Bug#919370: deal.ii: FTBFS on s390x: p4est.debug test fails

Graham Inggs-3
Source: deal.ii
Version: 9.0.1-1
Severity: serious
Tags: ftbfs

Hi Maintainer

Recent rebuilds of deal.ii on s390x have been failing with the following
errors:

Test project /<<PKGBUILDDIR>>/obj-s390x-linux-gnu/tests/quick_tests
       Start  1: step.debug
  1/19 Test  #1: step.debug .......................   Passed   21.48 sec
       Start  2: step.release
  2/19 Test  #2: step.release .....................   Passed   19.35 sec
       Start  3: affinity.debug
  3/19 Test  #3: affinity.debug ...................   Passed    8.94 sec
       Start  4: mpi.debug
  4/19 Test  #4: mpi.debug ........................   Passed    9.87 sec
       Start  5: tbb.debug
  5/19 Test  #5: tbb.debug ........................   Passed    8.52 sec
       Start  6: p4est.debug
  6/19 Test  #6: p4est.debug ......................***Failed   11.98 sec

...

p4est.debug: RUN failed. Output:
[zani:21379] *** Process received signal ***
[zani:21379] Signal: Segmentation fault (11)
[zani:21379] Signal code: Address not mapped (1)
[zani:21379] Failing at address: 0x3ff74000000
[zani:21379] [ 0] [0x3ffcf1fc300]
[zani:21379] [ 1]
/usr/lib/s390x-linux-gnu/pmix/lib/pmix/mca_gds_ds21.so(+0x20c8)[0x3ff6fe020c8]
[zani:21379] [ 2]
/usr/lib/s390x-linux-gnu/libmca_common_dstore.so.1(pmix_common_dstor_init+0x9f8)[0x3ff6fd0a570]
[zani:21379] [ 3]
/usr/lib/s390x-linux-gnu/pmix/lib/pmix/mca_gds_ds21.so(+0x1d44)[0x3ff6fe01d44]
[zani:21379] [ 4]
/usr/lib/s390x-linux-gnu/libpmix.so.2(pmix_gds_base_select+0x124)[0x3ff742d8f34]
[zani:21379] [ 5]
/usr/lib/s390x-linux-gnu/libpmix.so.2(pmix_rte_init+0x626)[0x3ff7428e73e]
[zani:21379] [ 6]
/usr/lib/s390x-linux-gnu/libpmix.so.2(PMIx_Init+0xfa)[0x3ff7424aafa]
[zani:21379] [ 7]
/usr/lib/s390x-linux-gnu/openmpi/lib/openmpi3/mca_pmix_ext2x.so(ext2x_client_init+0xe2)[0x3ff7440c152]
[zani:21379] [ 8]
/usr/lib/s390x-linux-gnu/openmpi/lib/openmpi3/mca_ess_pmi.so(+0x1ccc)[0x3ff74d01ccc]
[zani:21379] [ 9]
/usr/lib/s390x-linux-gnu/libopen-rte.so.40(orte_init+0x2da)[0x3ff7bf1b962]
[zani:21379] [10]
/usr/lib/s390x-linux-gnu/libmpi.so.40(ompi_mpi_init+0x2fe)[0x3ff8494c3d6]
[zani:21379] [11]
/usr/lib/s390x-linux-gnu/libmpi.so.40(PMPI_Init_thread+0x6c)[0x3ff8497b214]
[zani:21379] [12]
/<<PKGBUILDDIR>>/obj-s390x-linux-gnu/lib/s390x-linux-gnu/libdeal.ii.g.so.9.0.1(_ZN6dealii9Utilities3MPI16MPI_InitFinalizeC2ERiRPPcj+0x82)[0x3ff8cb4cae2]
[zani:21379] [13] ./p4est.debug(main+0x40)[0x11a2a37b0]
[zani:21379] [14]
/lib/s390x-linux-gnu/libc.so.6(__libc_start_main+0x10e)[0x3ff84524176]
[zani:21379] [15] ./p4est.debug(+0x23614)[0x11a2a3614]
[zani:21379] [16] [0x0]
[zani:21379] *** End of error message ***
--------------------------------------------------------------------------
Primary job  terminated normally, but 1 process returned
a non-zero exit code. Per user-direction, the job has been aborted.
--------------------------------------------------------------------------
[zani:21385] *** Process received signal ***
[zani:21385] Signal: Segmentation fault (11)
[zani:21385] Signal code: Address not mapped (1)
[zani:21385] Failing at address: 0x3ff8c000000
[zani:21385] [ 0] [0x3ffebd7c180]
[zani:21385] [ 1]
/usr/lib/s390x-linux-gnu/pmix/lib/pmix/mca_gds_ds21.so(+0x20c8)[0x3ff8c0820c8]
[zani:21385] [ 2]
/usr/lib/s390x-linux-gnu/libmca_common_dstore.so.1(pmix_common_dstor_init+0x9f8)[0x3ff87f0a570]
[zani:21385] [ 3]
/usr/lib/s390x-linux-gnu/pmix/lib/pmix/mca_gds_ds21.so(+0x1d44)[0x3ff8c081d44]
[zani:21385] [ 4]
/usr/lib/s390x-linux-gnu/libpmix.so.2(pmix_gds_base_select+0x124)[0x3ff8c4d8f34]
[zani:21385] [ 5]
/usr/lib/s390x-linux-gnu/libpmix.so.2(pmix_rte_init+0x626)[0x3ff8c48e73e]
[zani:21385] [ 6]
/usr/lib/s390x-linux-gnu/libpmix.so.2(PMIx_Init+0xfa)[0x3ff8c44aafa]
[zani:21385] [ 7]
/usr/lib/s390x-linux-gnu/openmpi/lib/openmpi3/mca_pmix_ext2x.so(ext2x_client_init+0xe2)[0x3ff8c60c152]
[zani:21385] [ 8]
/usr/lib/s390x-linux-gnu/openmpi/lib/openmpi3/mca_ess_pmi.so(+0x1ccc)[0x3ff8cf01ccc]
[zani:21385] [ 9]
/usr/lib/s390x-linux-gnu/libopen-rte.so.40(orte_init+0x2da)[0x3ff9411b962]
[zani:21385] [10]
/usr/lib/s390x-linux-gnu/libmpi.so.40(ompi_mpi_init+0x2fe)[0x3ff9cb4c3d6]
[zani:21385] [11]
/usr/lib/s390x-linux-gnu/libmpi.so.40(PMPI_Init_thread+0x6c)[0x3ff9cb7b214]
[zani:21385] [12]
/<<PKGBUILDDIR>>/obj-s390x-linux-gnu/lib/s390x-linux-gnu/libdeal.ii.g.so.9.0.1(_ZN6dealii9Utilities3MPI16MPI_InitFinalizeC2ERiRPPcj+0x82)[0x3ffa4d4cae2]
[zani:21385] [13] ./p4est.debug(main+0x40)[0x10ea237b0]
[zani:21385] [14]
/lib/s390x-linux-gnu/libc.so.6(__libc_start_main+0x10e)[0x3ff9c724176]
[zani:21385] [15] ./p4est.debug(+0x23614)[0x10ea23614]
[zani:21385] [16] [0x0]
[zani:21385] *** End of error message ***
[zani:21386] *** Process received signal ***
[zani:21386] Signal: Segmentation fault (11)
[zani:21386] Signal code: Address not mapped (1)
[zani:21386] Failing at address: 0x3ff70000000
[zani:21386] [ 0] [0x3ffe8bfada0]
[zani:21386] [ 1]
/usr/lib/s390x-linux-gnu/pmix/lib/pmix/mca_gds_ds21.so(+0x20c8)[0x3ff6be820c8]
[zani:21386] [ 2]
/usr/lib/s390x-linux-gnu/libmca_common_dstore.so.1(pmix_common_dstor_init+0x9f8)[0x3ff6bd8a570]
[zani:21386] [ 3]
/usr/lib/s390x-linux-gnu/pmix/lib/pmix/mca_gds_ds21.so(+0x1d44)[0x3ff6be81d44]
[zani:21386] [ 4]
/usr/lib/s390x-linux-gnu/libpmix.so.2(pmix_gds_base_select+0x124)[0x3ff70358f34]
[zani:21386] [ 5]
/usr/lib/s390x-linux-gnu/libpmix.so.2(pmix_rte_init+0x626)[0x3ff7030e73e]
[zani:21386] [ 6]
/usr/lib/s390x-linux-gnu/libpmix.so.2(PMIx_Init+0xfa)[0x3ff702caafa]
[zani:21386] [ 7]
/usr/lib/s390x-linux-gnu/openmpi/lib/openmpi3/mca_pmix_ext2x.so(ext2x_client_init+0xe2)[0x3ff7048c152]
[zani:21386] [ 8]
/usr/lib/s390x-linux-gnu/openmpi/lib/openmpi3/mca_ess_pmi.so(+0x1ccc)[0x3ff70d81ccc]
[zani:21386] [ 9]
/usr/lib/s390x-linux-gnu/libopen-rte.so.40(orte_init+0x2da)[0x3ff77f9b962]
[zani:21386] [10]
/usr/lib/s390x-linux-gnu/libmpi.so.40(ompi_mpi_init+0x2fe)[0x3ff809cc3d6]
[zani:21386] [11]
/usr/lib/s390x-linux-gnu/libmpi.so.40(PMPI_Init_thread+0x6c)[0x3ff809fb214]
[zani:21386] [12]
/<<PKGBUILDDIR>>/obj-s390x-linux-gnu/lib/s390x-linux-gnu/libdeal.ii.g.so.9.0.1(_ZN6dealii9Utilities3MPI16MPI_InitFinalizeC2ERiRPPcj+0x82)[0x3ff88bccae2]
[zani:21386] [13] ./p4est.debug(main+0x40)[0x138a237b0]
[zani:21386] [14]
/lib/s390x-linux-gnu/libc.so.6(__libc_start_main+0x10e)[0x3ff805a4176]
[zani:21386] [15] ./p4est.debug(+0x23614)[0x138a23614]
[zani:21386] [16] [0x0]
[zani:21386] *** End of error message ***
[zani:21383] *** Process received signal ***
[zani:21383] Signal: Segmentation fault (11)
[zani:21383] Signal code: Address not mapped (1)
[zani:21383] Failing at address: 0x3ff68000000
[zani:21383] [ 0] [0x3fff0b7ba60]
[zani:21383] [ 1]
/usr/lib/s390x-linux-gnu/pmix/lib/pmix/mca_gds_ds21.so(+0x20c8)[0x3ff63c020c8]
[zani:21383] [ 2]
/usr/lib/s390x-linux-gnu/libmca_common_dstore.so.1(pmix_common_dstor_init+0x9f8)[0x3ff63b0a570]
[zani:21383] [ 3]
/usr/lib/s390x-linux-gnu/pmix/lib/pmix/mca_gds_ds21.so(+0x1d44)[0x3ff63c01d44]
[zani:21383] [ 4]
/usr/lib/s390x-linux-gnu/libpmix.so.2(pmix_gds_base_select+0x124)[0x3ff63f58f34]
[zani:21383] [ 5]
/usr/lib/s390x-linux-gnu/libpmix.so.2(pmix_rte_init+0x626)[0x3ff63f0e73e]
[zani:21383] [ 6]
/usr/lib/s390x-linux-gnu/libpmix.so.2(PMIx_Init+0xfa)[0x3ff63ecaafa]
[zani:21383] [ 7]
/usr/lib/s390x-linux-gnu/openmpi/lib/openmpi3/mca_pmix_ext2x.so(ext2x_client_init+0xe2)[0x3ff6820c152]
[zani:21383] [ 8]
/usr/lib/s390x-linux-gnu/openmpi/lib/openmpi3/mca_ess_pmi.so(+0x1ccc)[0x3ff68b01ccc]
[zani:21383] [ 9]
/usr/lib/s390x-linux-gnu/libopen-rte.so.40(orte_init+0x2da)[0x3ff6fd1b962]
[zani:21383] [10]
/usr/lib/s390x-linux-gnu/libmpi.so.40(ompi_mpi_init+0x2fe)[0x3ff7874c3d6]
[zani:21383] [11]
/usr/lib/s390x-linux-gnu/libmpi.so.40(PMPI_Init_thread+0x6c)[0x3ff7877b214]
[zani:21383] [12]
/<<PKGBUILDDIR>>/obj-s390x-linux-gnu/lib/s390x-linux-gnu/libdeal.ii.g.so.9.0.1(_ZN6dealii9Utilities3MPI16MPI_InitFinalizeC2ERiRPPcj+0x82)[0x3ff8094cae2]
[zani:21383] [13] ./p4est.debug(main+0x40)[0x1040237b0]
[zani:21383] [14]
/lib/s390x-linux-gnu/libc.so.6(__libc_start_main+0x10e)[0x3ff78324176]
[zani:21383] [15] ./p4est.debug(+0x23614)[0x104023614]
[zani:21383] [16] [0x0]
[zani:21383] *** End of error message ***
--------------------------------------------------------------------------
mpiexec noticed that process rank 1 with PID 0 on node zani exited on
signal 11 (Segmentation fault).

Regards
Graham


[1] https://buildd.debian.org/status/logs.php?pkg=deal.ii&arch=s390x

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Processed: Re: deal.ii: FTBFS on s390x: p4est.debug test fails

Debian Bug Tracking System
Processing control commands:

> severity -1 normal
Bug #919370 [src:deal.ii] deal.ii: FTBFS on s390x: p4est.debug test fails
Severity set to 'normal' from 'serious'

--
919370: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=919370
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